khmer (3.0.0~a3+dfsg-5ubuntu3) noble; urgency=medium

  * Ensure that the scripts properly close files that they open for writing.
    Python 3.12 seems to be less forgiving and oftentimes, files end up
    truncated.
  * Ensure importlib is used instead of imp, which was dropped from Python
    3.12.

 -- Olivier Gayot <olivier.gayot@canonical.com>  Sun, 26 Nov 2023 02:28:32 +0100

khmer (3.0.0~a3+dfsg-5ubuntu2) noble; urgency=medium

  * Fix obsolete function call in previous patch.

 -- Simon Quigley <tsimonq2@ubuntu.com>  Sat, 25 Nov 2023 11:11:03 -0600

khmer (3.0.0~a3+dfsg-5ubuntu1) noble; urgency=medium

  * Fix build against Python 3.12 (LP: #2044383).

 -- Olivier Gayot <olivier.gayot@canonical.com>  Thu, 23 Nov 2023 15:24:51 +0100

khmer (3.0.0~a3+dfsg-5build1) noble; urgency=medium

  * No-change rebuild to build with python3.12 as supported.

 -- Matthias Klose <doko@ubuntu.com>  Thu, 02 Nov 2023 09:21:00 +0100

khmer (3.0.0~a3+dfsg-5) unstable; urgency=medium

  * Team Upload.
  * Use sphinx-build since build_sphinx option is
    removed (Closes: #1042657)
  * Bump Standards-Version to 4.6.2 (no changes needed)

 -- Nilesh Patra <nilesh@debian.org>  Sat, 09 Sep 2023 13:03:41 +0530

khmer (3.0.0~a3+dfsg-4) unstable; urgency=medium

  * Team Upload.
  * Add patch to find object files at the right location (Closes: #1020031)
  * d/rules: split oxli make rules into two, pass parameters/env-vars to not
    over-clean for make-all call

 -- Nilesh Patra <nilesh@debian.org>  Sat, 24 Sep 2022 21:04:43 +0530

khmer (3.0.0~a3+dfsg-3) unstable; urgency=medium

  * debian/control: stop building on no-amd64 due to use of assembly
    in third_party/cqf

 -- Michael R. Crusoe <crusoe@debian.org>  Fri, 02 Sep 2022 13:58:03 +0200

khmer (3.0.0~a3+dfsg-2) unstable; urgency=medium

  * debian/patches/fix_non_x86_build: enable building on aarch64 and
    other non-x86 systems.
  * debian/patches/hardening: Restore standard build flags into third-
    party/cqf.

 -- Michael R. Crusoe <crusoe@debian.org>  Thu, 01 Sep 2022 16:14:43 +0200

khmer (3.0.0~a3+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Refreshed patches
  * Added patch to run Cython so we can support Python 3.10+
  * Forwarded most patches upstream
  * Remove trailing whitespace in debian/changelog (routine-update)

 -- Michael R. Crusoe <crusoe@debian.org>  Tue, 30 Aug 2022 19:41:55 +0200

khmer (2.1.2+dfsg-11) unstable; urgency=medium

  [ Stefano Rivera ]
  * Adapt to a change in Python3
    Closes: #1008402

  [ Michael R. Crusoe ]
  * debian/patches: some header cleanups.
  * debian/patches/stringio-buffer.patch: another fix for recent Python
    versions.
  * Fix license mismatch in AppStream metadata
  * Standards-Version: 4.6.1 (routine-update)

 -- Michael R. Crusoe <crusoe@debian.org>  Mon, 22 Aug 2022 11:53:48 +0200

khmer (2.1.2+dfsg-10) unstable; urgency=medium

  * Team upload.
  * Use python-bz2 instead of bz2file (addressing bug #987287)
  * Standards-Version: 4.6.0 (routine-update)

 -- Andreas Tille <tille@debian.org>  Fri, 03 Dec 2021 21:59:39 +0100

khmer (2.1.2+dfsg-9) unstable; urgency=medium

  [ Nilesh Patra ]
  * Team Upload.
  * debian/patches/gcc11.patch: Fix gcc-11 FTBFS (Closes: #984079)
  * d/salsa-ci.yml: Disable reprotest and i386 build
  * d/clean: Clean more files

  [ Steffen Moeller ]
  * Fix watchfile to detect new versions on github (routine-update)

 -- Nilesh Patra <nilesh@debian.org>  Mon, 06 Sep 2021 14:34:23 +0000

khmer (2.1.2+dfsg-8) unstable; urgency=medium

  * Fix autopkgtests for newer pytest: s/pyarg/pyargs/
  * Standards-Version: 4.5.1 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Update renamed lintian tag names in lintian overrides.
  * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.

 -- Michael R. Crusoe <crusoe@debian.org>  Mon, 04 Jan 2021 14:18:12 +0100

khmer (2.1.2+dfsg-7) unstable; urgency=medium

  * Simplify autopkgtest. Closes: #955566
  * s/ADTTMP/AUTOPKGTEST_TMP/g
  * Standards-Version: 4.5.0 (routine-update)
  * debhelper-compat 12 (routine-update)
  * Remove trailing whitespace in debian/changelog (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Use secure URI in Homepage field.
  * Remove obsolete fields Contact, Name from debian/upstream/metadata
    (already present in machine-readable debian/copyright).

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Tue, 07 Apr 2020 17:27:50 +0200

khmer (2.1.2+dfsg-6) unstable; urgency=medium

  * Fix building arch-independent packages separately.

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 09 Jan 2019 07:27:45 -0800

khmer (2.1.2+dfsg-5) unstable; urgency=medium

  * Fix liboxli-dev autopkgtest.
  * debian/khmer.metainfo.xml: Use a component ID in reverse domain-name
    format.
  * shrink khmer-common and silence many lintian warnings by symlinking to the
    relevant files in python3-guzzle-sphinx-theme

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Tue, 08 Jan 2019 06:16:30 -0800

khmer (2.1.2+dfsg-4) unstable; urgency=medium

  * Team upload.

  [ Michael R. Crusoe ]
  * deal with embedded-javascript-library.

  [ Andreas Tille ]
  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.3.0
  * Drop useless get-orig-source target
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
  * Drop ancient X-Python-Version field
  * package khmer is: Multi-Arch: foreign

 -- Andreas Tille <tille@debian.org>  Mon, 07 Jan 2019 15:22:24 +0100

khmer (2.1.2+dfsg-3) unstable; urgency=medium

  * Drop unsupported archs (mips*, ppc*).

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sun, 11 Feb 2018 02:20:06 -0800

khmer (2.1.2+dfsg-2) unstable; urgency=medium

  * Team upload
  * debhelper 10
  * Specify compression option from d/rules directly inside watch file
  * Fix clean target ba removing possibly existing __pycache__ and .eggs
  * Autopkgtest is making use of third-party header file - install this into
    liboxli-dev package and add according -I directive to test
    Closes: #851830
  * Standards-Version: 4.1.2

 -- Andreas Tille <tille@debian.org>  Fri, 15 Dec 2017 19:42:24 +0100

khmer (2.1.2+dfsg-1) unstable; urgency=medium

  * New upstream version 2.1.2

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sat, 07 Oct 2017 05:47:31 -0700

khmer (2.1.1+dfsg-1) unstable; urgency=medium

  [ Andreas Tille ]
  * Remove empty field

  [ Michael R. Crusoe ]
  * New upstream version 2.1.1
  * Incorporate patch from Ubuntu, thank you Michael Hudson-Doyle.
    Closes: #862380

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Tue, 29 Aug 2017 23:30:09 -0700

khmer (2.0+dfsg-10ubuntu1) artful; urgency=medium

  * Fix build with Python 3.6.

 -- Michael Hudson-Doyle <michael.hudson@ubuntu.com>  Fri, 12 May 2017 13:15:00 +1200

khmer (2.0+dfsg-10) unstable; urgency=medium

  * Team upload.
  * Revert "Drop arm64 due to failing tests."  Closes: #859752

 -- Mattia Rizzolo <mattia@debian.org>  Thu, 06 Apr 2017 22:02:24 +0200

khmer (2.0+dfsg-9) unstable; urgency=medium

  * Drop arm64 due to failing tests. (Closes: #851830)

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Tue, 24 Jan 2017 07:37:50 -0800

khmer (2.0+dfsg-8) unstable; urgency=medium

  * Team upload.
  * Enable static building ('--static') with pkg-config.
  * Have autopkgtests use pkg-config.

 -- Sascha Steinbiss <satta@debian.org>  Sun, 15 Jan 2017 13:13:43 +0000

khmer (2.0+dfsg-7) unstable; urgency=medium

  * make build reproducible

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 23 May 2016 12:55:46 -0700

khmer (2.0+dfsg-6) unstable; urgency=medium

  * Switch from deprecated ruby-ronn to asciidoctor for manpage generation
  * Bump Standards-Version to 3.9.8

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 04 May 2016 11:25:30 -0700

khmer (2.0+dfsg-5) unstable; urgency=medium

  * Add 'appdata' about our IANA media type courtesy of Petter Reinholdtsen
    <pere@hungry.com>

 -- Michael R. Crusoe <crusoe@ucdavis.edu>  Fri, 05 Feb 2016 13:14:34 -0800

khmer (2.0+dfsg-4) unstable; urgency=medium

  [Michael Crusoe]
  * Put the khmer package in the 'science' section
  * Tighten arch support

  [Kevin Murray]
  * Add crunchbangs to postinst & postrm scripts

 -- Michael R. Crusoe <crusoe@ucdavis.edu>  Mon, 25 Jan 2016 05:35:34 -0800

khmer (2.0+dfsg-3) unstable; urgency=medium

  * Fixed DEP-8 test dependencies (tested with lxc instructions at
    https://ci.debian.net/doc/file.MAINTAINERS.html )

 -- Michael R. Crusoe <crusoe@ucdavis.edu>  Mon, 11 Jan 2016 11:59:11 -0800

khmer (2.0+dfsg-2) unstable; urgency=medium

  [Michael Crusoe]
  * Be explicit about architecture support
  * Set home directory for building the docs (Closes: #808424)

  [Kevin Murray]
  * Ensure that liboxli-dev depends on liboxli1

 -- Michael R. Crusoe <crusoe@ucdavis.edu>  Sun, 20 Dec 2015 01:24:57 -0800

khmer (2.0+dfsg-1) unstable; urgency=low

  * Initial upload (Closes: #777688)

 -- Michael R. Crusoe <crusoe@ucdavis.edu>  Wed, 09 Sep 2015 08:54:11 +0200
